All parameters are slots within the gate object
Gate(
counter = NA_integer_,
assay_name = NA_character_,
input_cells = list(),
input_coords = data.frame(),
subset_cells = list(),
subset_coords = data.frame(),
x_axis = NA_character_,
y_axis = NA_character_,
gate_coords = list(),
name_subset_cells = NA_character_,
num_input_cells = NA_integer_,
num_subset_cells = NA_integer_,
total_num_cells_in_sample = NA_integer_,
pct_subset_from_previous = NA_real_,
pct_subset_from_total = NA_real_
)integer to keep track of gate number
character. Seurat object assay gates on
list. cells plotted
dataframe of plotted cell coordinates
list. cells selected
dataframe of selected cell coordinates
character. Feature on x-axis
character. Feature on y-axis
list. coordinates of drawn gate
character. user ipute of selected cell subset name
integer. number of total cells on plot
integer. number of cells selected
integer. number of total cells in seurat object
numeric. percentage of cells selected from cells plotted
numeric. percentage of cells selected from cells in Seurat object
Gate class object
# create Gate object
example_gate <- Gate(counter = as.integer(1),
assay_name = "example",
input_cells = list(c("a", "b", "c")),
input_coords = data.frame(x=c(1,2,3),y=c(4,5,6)),
subset_cells = list(c("a","b")),
subset_coords = data.frame(x=c(1,2),y=c(4,5)),
x_axis = "ADT-A",
y_axis = "ADT-B",
gate_coords = list(x=c(1,2,3,4),y=c(5,6,7,8)),
name_subset_cells = "example_cells_A",
num_input_cells = as.integer(1000),
num_subset_cells = as.integer(500),
total_num_cells_in_sample = as.integer(1000),
pct_subset_from_previous = 50,
pct_subset_from_total = 50)