Populate/update gating data frame
update_gating_df(gate_name_string, reactive_gate_list, temp_gating_df)character string of new gate name
shiny reactivelist of gates
empty gating dataframe built from create_gating_df function
updated gating dataframe
# create an empty gating data frame using create_gating_df()
example_df <- create_gating_df()
# create Gate object
example_gate1 <- Gate(counter = as.integer(1),
assay_name = "example1",
input_cells = list(c("a", "b", "c")),
input_coords = data.frame(x=c(1,2,3),y=c(4,5,6)),
subset_cells = list(c("a","b")),
subset_coords = data.frame(x=c(1,2),y=c(4,5)),
x_axis = "ADT-A",
y_axis = "ADT-B",
gate_coords = list(x=c(1,2,3,4),y=c(5,6,7,8)),
name_subset_cells = "example_cells_A",
num_input_cells = as.integer(1000),
num_subset_cells = as.integer(500),
total_num_cells_in_sample = as.integer(1000),
pct_subset_from_previous = 50,
pct_subset_from_total = 50)
# update_gating_df() requires a list of gate objects to choose from
example_gate2 <- Gate(counter = as.integer(2),
assay_name = "example2",
input_cells = list(c("a", "b")),
input_coords = data.frame(x=c(1,2),y=c(4,5)),
subset_cells = list(c("a")),
subset_coords = data.frame(x=c(1),y=c(4)),
x_axis = "ADT-C",
y_axis = "ADT-D",
gate_coords = list(x=c(10,20,30,40),y=c(50,60,70,80)),
name_subset_cells = "example_cells_B",
num_input_cells = as.integer(500),
num_subset_cells = as.integer(100),
total_num_cells_in_sample = as.integer(1000),
pct_subset_from_previous = 20,
pct_subset_from_total = 10)
example_gate_list <- list("gate1" = example_gate1, "gate2" = example_gate2)
# Inputs contents of Gate object into empty gating dataframe
example_df <- update_gating_df(gate_name_string = "gate1", reactive_gate_list = example_gate_list, temp_gating_df = example_df)
example_df <- update_gating_df(gate_name_string = "gate2", reactive_gate_list = example_gate_list, temp_gating_df = example_df)